Introduction
In this tutorial we learn how to install sumtrees on Kali Linux.
What is sumtrees
sumtrees is:
SumTrees is a program to summarize non-parameteric bootstrap or
Bayesian posterior probability support for splits or clades on
phylogenetic trees.
The basis of the support assessment is typically given by a set of
non-parametric bootstrap replicate tree samples produced by programs
such as GARLI or RAxML, or by a set of MCMC tree samples produced by
programs such as Mr. Bayes or BEAST. The proportion of trees out of the
samples in which a particular split is found is taken to be the degree
of support for that split as indicated by the samples. The samples that
are the basis of the support can be distributed across multiple files,
and a burn-in option allows for an initial number of trees in each file
to be excluded from the analysis if they are not considered to be drawn
from the true support distribution.
There are three methods to install sumtrees on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install sumtrees Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get updateAfter updating apt database, We can install sumtrees using apt-get by running the following command:
sudo apt-get -y install sumtreesInstall sumtrees Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install sumtrees using apt by running the following command:
sudo apt -y install sumtreesInstall sumtrees Using aptitude
If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install sumtrees using aptitude by running the following command:
sudo aptitude -y install sumtrees
How To Uninstall sumtrees on Kali Linux
To uninstall only the sumtrees package we can use the following command:
sudo apt-get remove sumtrees
Uninstall sumtrees And Its Dependencies
To uninstall sumtrees and its dependencies that are no longer needed by Kali Linux, we can use the command below:
sudo apt-get -y autoremove sumtrees
Remove sumtrees Configurations and Data
To remove sumtrees configuration and data from Kali Linux we can use the following command:
sudo apt-get -y purge sumtrees
Remove sumtrees configuration, data, and all of its dependencies
We can use the following command to remove sumtrees configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge sumtrees
Dependencies
sumtrees have the following dependencies:
References
Summary
In this tutorial we learn how to install sumtrees package on Kali Linux using different package management tools: apt, apt-get and aptitude.
