Introduction
In this tutorial we learn how to install aegean on Ubuntu 22.04.
What is aegean
aegean is:
The AEGeAn Toolkit is designed for the Analysis and Evaluation of Genome
Annotations. The toolkit includes a variety of analysis programs, e.g. for
comparing distinct sets of gene structure annotations (ParsEval), computation
of gene loci (LocusPocus) and more.
There are three methods to install aegean on Ubuntu 22.04. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install aegean Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install aegean using apt-get by running the following command:
sudo apt-get -y install aegean
Install aegean Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install aegean using apt by running the following command:
sudo apt -y install aegean
Install aegean Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install aegean using aptitude by running the following command:
sudo aptitude -y install aegean
How To Uninstall aegean on Ubuntu 22.04
To uninstall only the aegean package we can use the following command:
sudo apt-get remove aegean
Uninstall aegean And Its Dependencies
To uninstall aegean and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove aegean
Remove aegean Configurations and Data
To remove aegean configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge aegean
Remove aegean configuration, data, and all of its dependencies
We can use the following command to remove aegean configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge aegean
References
Summary
In this tutorial we learn how to install aegean package on Ubuntu 22.04 using different package management tools: apt, apt-get and aptitude.
