Introduction
In this tutorial we learn how to install libfreecontact-doc on Ubuntu 22.04.
What is libfreecontact-doc
libfreecontact-doc is:
FreeContact is a protein residue contact predictor optimized for speed.
Its input is a multiple sequence alignment. FreeContact can function as an
accelerated drop-in for the published contact predictors
EVfold-mfDCA of DS. Marks (2011) and
PSICOV of D. Jones (2011).
FreeContact is accelerated by a combination of vector instructions, multiple
threads, and faster implementation of key parts.
Depending on the alignment, 8-fold or higher speedups are possible.
A sufficiently large alignment is required for meaningful results.
As a minimum, an alignment with an effective (after-weighting) sequence count
bigger than the length of the query sequence should be used. Alignments with
tens of thousands of (effective) sequences are considered good input.
jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite
can be used to generate the alignments, for example.
This package contains HTML documentation for libfreecontact.
There are three methods to install libfreecontact-doc on Ubuntu 22.04. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install libfreecontact-doc Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install libfreecontact-doc using apt-get by running the following command:
sudo apt-get -y install libfreecontact-doc
Install libfreecontact-doc Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install libfreecontact-doc using apt by running the following command:
sudo apt -y install libfreecontact-doc
Install libfreecontact-doc Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install libfreecontact-doc using aptitude by running the following command:
sudo aptitude -y install libfreecontact-doc
How To Uninstall libfreecontact-doc on Ubuntu 22.04
To uninstall only the libfreecontact-doc package we can use the following command:
sudo apt-get remove libfreecontact-doc
Uninstall libfreecontact-doc And Its Dependencies
To uninstall libfreecontact-doc and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove libfreecontact-doc
Remove libfreecontact-doc Configurations and Data
To remove libfreecontact-doc configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge libfreecontact-doc
Remove libfreecontact-doc configuration, data, and all of its dependencies
We can use the following command to remove libfreecontact-doc configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge libfreecontact-doc
References
Summary
In this tutorial we learn how to install libfreecontact-doc package on Ubuntu 22.04 using different package management tools: apt, apt-get and aptitude.
