Introduction
In this tutorial we learn how to install ampliconnoise on Ubuntu 22.04.
What is ampliconnoise
ampliconnoise is:
AmpliconNoise is a package of applications to clean up high-throughput
sequence data. It consists of three main parts:
Pyronoise – does flowgram-based clustering to spot misreads
SeqNoise – removes PCR point mutations
Perseus – removes PCR chimeras without the need for a set of reference
sequences
Previously there was a standalone “Pyronoise†by the same authors and
this package includes an updated version. There is also a “Denoiserâ€
in Qiime which is related but distinct.
There are three methods to install ampliconnoise on Ubuntu 22.04. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install ampliconnoise Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install ampliconnoise using apt-get by running the following command:
sudo apt-get -y install ampliconnoise
Install ampliconnoise Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install ampliconnoise using apt by running the following command:
sudo apt -y install ampliconnoise
Install ampliconnoise Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install ampliconnoise using aptitude by running the following command:
sudo aptitude -y install ampliconnoise
How To Uninstall ampliconnoise on Ubuntu 22.04
To uninstall only the ampliconnoise package we can use the following command:
sudo apt-get remove ampliconnoise
Uninstall ampliconnoise And Its Dependencies
To uninstall ampliconnoise and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove ampliconnoise
Remove ampliconnoise Configurations and Data
To remove ampliconnoise configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge ampliconnoise
Remove ampliconnoise configuration, data, and all of its dependencies
We can use the following command to remove ampliconnoise configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge ampliconnoise
References
Summary
In this tutorial we learn how to install ampliconnoise package on Ubuntu 22.04 using different package management tools: apt, apt-get and aptitude.
