Introduction
In this tutorial we learn how to install ataqv on Ubuntu 22.04.
What is ataqv
ataqv is:
A toolkit for measuring and comparing ATAC-seq results, made in the
Parker lab at the University of Michigan. They wrote it to help
understand how well their ATAC-seq assays had worked, and to make it
easier to spot differences that might be caused by library prep or
sequencing.
There are three methods to install ataqv on Ubuntu 22.04. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install ataqv Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install ataqv using apt-get by running the following command:
sudo apt-get -y install ataqv
Install ataqv Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install ataqv using apt by running the following command:
sudo apt -y install ataqv
Install ataqv Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install ataqv using aptitude by running the following command:
sudo aptitude -y install ataqv
How To Uninstall ataqv on Ubuntu 22.04
To uninstall only the ataqv package we can use the following command:
sudo apt-get remove ataqv
Uninstall ataqv And Its Dependencies
To uninstall ataqv and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove ataqv
Remove ataqv Configurations and Data
To remove ataqv configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge ataqv
Remove ataqv configuration, data, and all of its dependencies
We can use the following command to remove ataqv configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge ataqv
References
Summary
In this tutorial we learn how to install ataqv package on Ubuntu 22.04 using different package management tools: apt, apt-get and aptitude.
