How To Install bedops-doc on Ubuntu 20.04

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In this tutorial we learn how to install bedops-doc on Ubuntu 20.04. bedops-doc is high-performance genomic feature operations (documentation)

Introduction

In this tutorial we learn how to install bedops-doc on Ubuntu 20.04.

What is bedops-doc

bedops-doc is:

BEDOPS is a suite of tools to address common questions raised in genomic
studies, mostly with regard to overlap and proximity relationships between
data sets.
It aims to be scalable and flexible, facilitating the efficient and accurate
analysis and management of large-scale genomic data.

This package contains the BEDOPS documentation.

There are three methods to install bedops-doc on Ubuntu 20.04. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install bedops-doc Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install bedops-doc using apt-get by running the following command:

sudo apt-get -y install bedops-doc

Install bedops-doc Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install bedops-doc using apt by running the following command:

sudo apt -y install bedops-doc

Install bedops-doc Using aptitude

If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install bedops-doc using aptitude by running the following command:

sudo aptitude -y install bedops-doc

How To Uninstall bedops-doc on Ubuntu 20.04

To uninstall only the bedops-doc package we can use the following command:

sudo apt-get remove bedops-doc

Uninstall bedops-doc And Its Dependencies

To uninstall bedops-doc and its dependencies that are no longer needed by Ubuntu 20.04, we can use the command below:

sudo apt-get -y autoremove bedops-doc

Remove bedops-doc Configurations and Data

To remove bedops-doc configuration and data from Ubuntu 20.04 we can use the following command:

sudo apt-get -y purge bedops-doc

Remove bedops-doc configuration, data, and all of its dependencies

We can use the following command to remove bedops-doc configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge bedops-doc

References

Summary

In this tutorial we learn how to install bedops-doc package on Ubuntu 20.04 using different package management tools: apt, apt-get and aptitude.

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