Introduction
In this tutorial we learn how to install garlic
on Ubuntu 20.04.
What is garlic
garlic is:
Garlic is written for the investigation of membrane proteins. It may be
used to visualize other proteins, as well as some geometric objects.
This version of garlic recognizes PDB format version 2.1. Garlic may
also be used to analyze protein sequences.
It only depends on the X libraries, no other libraries are needed.
Features include:
- The slab position and thickness are visible in a small window.
- Atomic bonds as well as atoms are treated as independent drawable
objects. - The atomic and bond colors depend on position. Five mapping modes
are available (as for slab). - Capable to display stereo image.
- Capable to display other geometric objects, like membrane.
- Atomic information is available for atom covered by the mouse
pointer. No click required, just move the mouse pointer over the
structure! - Capable to load more than one structure.
- Capable to draw Ramachandran plot, helical wheel, Venn diagram,
averaged hydrophobicity and hydrophobic moment plot. - The command prompt is available at the bottom of the main window.
It is able to display one error message and one command string.
There are three methods to install garlic
on Ubuntu 20.04. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install garlic Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install garlic
using apt-get
by running the following command:
sudo apt-get -y install garlic
Install garlic Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install garlic
using apt
by running the following command:
sudo apt -y install garlic
Install garlic Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install garlic
using aptitude
by running the following command:
sudo aptitude -y install garlic
How To Uninstall garlic on Ubuntu 20.04
To uninstall only the garlic
package we can use the following command:
sudo apt-get remove garlic
Uninstall garlic And Its Dependencies
To uninstall garlic
and its dependencies that are no longer needed by Ubuntu 20.04, we can use the command below:
sudo apt-get -y autoremove garlic
Remove garlic Configurations and Data
To remove garlic
configuration and data from Ubuntu 20.04 we can use the following command:
sudo apt-get -y purge garlic
Remove garlic configuration, data, and all of its dependencies
We can use the following command to remove garlic
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge garlic
References
Summary
In this tutorial we learn how to install garlic
package on Ubuntu 20.04 using different package management tools: apt
, apt-get
and aptitude
.