Introduction
In this tutorial we learn how to install ampliconnoise on Kali Linux.
What is ampliconnoise
ampliconnoise is:
AmpliconNoise is a package of applications to clean up high-throughput
sequence data. It consists of three main parts:
Pyronoise – does flowgram-based clustering to spot misreads
SeqNoise – removes PCR point mutations
Perseus – removes PCR chimeras without the need for a set of reference
sequences
Previously there was a standalone “Pyronoise” by the same authors and
this package includes an updated version. There is also a “Denoiser”
in Qiime which is related but distinct.
There are three methods to install ampliconnoise on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install ampliconnoise Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get updateAfter updating apt database, We can install ampliconnoise using apt-get by running the following command:
sudo apt-get -y install ampliconnoiseInstall ampliconnoise Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install ampliconnoise using apt by running the following command:
sudo apt -y install ampliconnoiseInstall ampliconnoise Using aptitude
If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.
sudo aptitude updateAfter updating apt database, We can install ampliconnoise using aptitude by running the following command:
sudo aptitude -y install ampliconnoise
How To Uninstall ampliconnoise on Kali Linux
To uninstall only the ampliconnoise package we can use the following command:
sudo apt-get remove ampliconnoise
Uninstall ampliconnoise And Its Dependencies
To uninstall ampliconnoise and its dependencies that are no longer needed by Kali Linux, we can use the command below:
sudo apt-get -y autoremove ampliconnoise
Remove ampliconnoise Configurations and Data
To remove ampliconnoise configuration and data from Kali Linux we can use the following command:
sudo apt-get -y purge ampliconnoise
Remove ampliconnoise configuration, data, and all of its dependencies
We can use the following command to remove ampliconnoise configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge ampliconnoise
Dependencies
ampliconnoise have the following dependencies:
References
Summary
In this tutorial we learn how to install ampliconnoise package on Kali Linux using different package management tools: apt, apt-get and aptitude.
