Introduction
In this tutorial we learn how to install artfastqgenerator-examples
on Kali Linux.
What is artfastqgenerator-examples
artfastqgenerator-examples is:
ArtificialFastqGenerator takes the reference genome (in FASTA format) as
input and outputs artificial FASTQ files in the Sanger format. It can
accept Phred base quality scores from existing FASTQ files, and use them
to simulate sequencing errors. Since the artificial FASTQs are derived
from the reference genome, the reference genome provides a gold-standard
for calling variants (Single Nucleotide Polymorphisms (SNPs) and
insertions and deletions (indels)). This enables evaluation of a Next
Generation Sequencing (NGS) analysis pipeline which aligns reads to the
reference genome and then calls the variants.
This package contains example data for artfastqgenerator.
There are three methods to install artfastqgenerator-examples
on Kali Linux. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install artfastqgenerator-examples Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install artfastqgenerator-examples
using apt-get
by running the following command:
sudo apt-get -y install artfastqgenerator-examples
Install artfastqgenerator-examples Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install artfastqgenerator-examples
using apt
by running the following command:
sudo apt -y install artfastqgenerator-examples
Install artfastqgenerator-examples Using aptitude
If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install artfastqgenerator-examples
using aptitude
by running the following command:
sudo aptitude -y install artfastqgenerator-examples
How To Uninstall artfastqgenerator-examples on Kali Linux
To uninstall only the artfastqgenerator-examples
package we can use the following command:
sudo apt-get remove artfastqgenerator-examples
Uninstall artfastqgenerator-examples And Its Dependencies
To uninstall artfastqgenerator-examples
and its dependencies that are no longer needed by Kali Linux, we can use the command below:
sudo apt-get -y autoremove artfastqgenerator-examples
Remove artfastqgenerator-examples Configurations and Data
To remove artfastqgenerator-examples
configuration and data from Kali Linux we can use the following command:
sudo apt-get -y purge artfastqgenerator-examples
Remove artfastqgenerator-examples configuration, data, and all of its dependencies
We can use the following command to remove artfastqgenerator-examples
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge artfastqgenerator-examples
Dependencies
artfastqgenerator-examples have the following dependencies:
References
Summary
In this tutorial we learn how to install artfastqgenerator-examples
package on Kali Linux using different package management tools: apt
, apt-get
and aptitude
.