Introduction
In this tutorial we learn how to install garli-mpi
on Ubuntu 20.04.
What is garli-mpi
garli-mpi is:
GARLI, Genetic Algorithm for Rapid Likelihood Inference is a program for
inferring phylogenetic trees. Using an approach similar to a classical
genetic algorithm, it rapidly searches the space of evolutionary trees
and model parameters to find the solution maximizing the likelihood
score. It implements nucleotide, amino acid and codon-based models of
sequence evolution, and runs on all platforms. The latest version adds
support for partitioned models and morphology-like datatypes.
This version of Garli is using MPI.
There are three methods to install garli-mpi
on Ubuntu 20.04. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install garli-mpi Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install garli-mpi
using apt-get
by running the following command:
sudo apt-get -y install garli-mpi
Install garli-mpi Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install garli-mpi
using apt
by running the following command:
sudo apt -y install garli-mpi
Install garli-mpi Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install garli-mpi
using aptitude
by running the following command:
sudo aptitude -y install garli-mpi
How To Uninstall garli-mpi on Ubuntu 20.04
To uninstall only the garli-mpi
package we can use the following command:
sudo apt-get remove garli-mpi
Uninstall garli-mpi And Its Dependencies
To uninstall garli-mpi
and its dependencies that are no longer needed by Ubuntu 20.04, we can use the command below:
sudo apt-get -y autoremove garli-mpi
Remove garli-mpi Configurations and Data
To remove garli-mpi
configuration and data from Ubuntu 20.04 we can use the following command:
sudo apt-get -y purge garli-mpi
Remove garli-mpi configuration, data, and all of its dependencies
We can use the following command to remove garli-mpi
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge garli-mpi
References
Summary
In this tutorial we learn how to install garli-mpi
package on Ubuntu 20.04 using different package management tools: apt
, apt-get
and aptitude
.